FIMO version , (Release date: )

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011.

• FIMO was configured to keep at most occurences for each motif in memory. The following motifs each had more than occurences with p-value less than . The less significant occurences were dropped.

  Motif	Max. p-value retained

  The maximum number of occurences to be kept in memory can be set using the --max-stored-scores option.
• There were motif occurences with a q-value less than p-value less than . Only the most significant are shown here. The full set of motif occurences can be seen in the tab-delimited plain text output file: fimo.txt
• The p-value of a motif occurrence is defined as the probability of a random sequence of the same length as the motif matching that position of the sequence with as good or better a score.
• The score for the match of a position in a sequence to a motif is computed by summing the appropriate entries from each column of the position-dependent scoring matrix that represents the motif.
• The q-value of a motif occurrence is defined as the false discovery rate if the occurrence is accepted as significant.
• The table is sorted by increasing p-value.

Command line:

Settings:

This information can be useful in the event you wish to report a problem with the FIMO software.