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Mutation Design
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Rohs Lab
JASPAR
Species:
Choose Species
Antirrhinum majus
Arabidopsis thaliana
Caenorhabditis elegans
Drosophila melanogaster
Gallus gallus
Halocynthia roretzi
Homo sapiens
Homo sapiens Gallus gallus Rattus norvegicus Oncorhynchus mykiss Mus musculus
Homo sapiens Mus musculus
Homo sapiens Rattus norvegicus Mus musculus
Hordeum vulgare
Mus musculus
Mus musculus Bos taurus Oryctolagus cuniculus Homo sapiens Gallus gallus Xenopus (Silurana) tropicalis Xenopus laevis Rattus norvegicus
Mus musculus Homo sapiens
Mus musculus Homo sapiens Rattus norvegicus
Mus musculus Rattus norvegicus
Mus musculus Rattus norvegicus Homo sapiens
Mus musculus Rattus rattus Homo sapiens Oryctolagus cuniculus
Mus musculus Xenopus laevis Rattus norvegicus Xenopus (Silurana) tropicalis Gallus gallus Homo sapiens Bos taurus Oryctolagus cuniculus
Nicotiana sp.
Petunia x hybrida
Pisum sativum
Rattus norvegicus
Rattus norvegicus Homo sapiens
Rattus norvegicus Oryctolagus cuniculus Homo sapiens Mus musculus
Rattus rattus
Triticum aestivum
Unknown
Vertebrata
Xenopus laevis
Zea mays
Class:
Choose Class
AP2\/ERF domain
ARID domain factors
ARID-related factors
B3 domain
Basic helix-loop-helix factors (bHLH)
Basic helix-span-helix factors (bHSH)
Basic leucine zipper factors (bZIP)
Basic leucine zipper factors (bZIP)::Basic leucine zipper factors (bZIP)
C2CH THAP-type zinc finger factors
C2H2 zinc finger factors
CG-1 domain
CRC domain
DM-type intertwined zinc finger factors
Fork head \/ winged helix factors
Grainyhead domain factors
Heat shock factors
Helix-Turn-Helix
Heteromeric CCAAT-binding factors
High-mobility group (HMG) domain factors
Homeo domain factors
Homeo domain factors::High-mobility group (HMG) domain factors
MADS box factors
mTERF
Myb\/SANT domain factors
NAC\/NAM
Nuclear receptors with C4 zinc fingers
Other
Other alpha
Other C4 zinc finger-type factors
Other C4 zinc finger-type factors::Basic helix-loop-helix factors (bHLH)
p53 domain factors
Paired box factors
Rel homology region (RHR) factors
Runt domain factors
SAND domain factors
SBP-type zinc finger
SKI \/ DACH domain factors
SMAD\/NF-1 DNA-binding domain factors
SMAD\/NF-1 DNA-binding domain factors::Homeo domain factors
SMAD\/NF-1 DNA-binding domain factors::SMAD\/NF-1 DNA-binding domain factors
STAT domain factors
T-Box factors
TEA domain factors
Tryptophan cluster factors
Unknown
Winged Helix-Turn-Helix
WRKY
Zinc-coordinating
Zipper-type
Family:
Choose Family
AP-2
ARID-related factors
ATF-4-related factors
B-ATF-related factors
B-ATF-related factors::Jun-related factors
BBR-BPC
BED zinc finger factors
BES1
BES2
BES3
bHLH-ZIP factors
Brachyury-related factors
C\/EBP-related
C\/EBP-related factors
C3H Zinc Figer
CAMTA
CP2-related factors
CPP
CREB-related factors
CSL-related factors
CXC
DACH \/ dachshund-related factors
DEAF
DMRT factors
Dof-type
E2A-related factors
E2F
E2F-related factors
Early B-Cell Factor-related factors
Ets-related factors
Factors with multiple dispersed zinc fingers
Forkhead box (FOX) factors
Fos-related factors
Fos-related factors::Jun-related factors
FTZ-F1-related receptors (NR5)
G2-like
GATA-type zinc fingers
GATA-type zinc fingers::Tal-related factors
Grainyhead-related factors
Hairy-related factors
HD-CUT factors
HD-LIM factors
HD-SINE factors
HD-ZF factors
HD-ZIP factors
Helix-Loop-Helix
High Mobility Group box (HMG)
Homeo
HOX-related factors
HSF factors
Interferon-regulatory factors
Jun-related factors
Jun-related factors::Maf-related factors
LBD
MADS
Maf-related factors
Maf-related factors::Jun-related factors
More than 3 adjacent zinc finger factors
More than 3 adjacent zinc fingers
More than 3 adjacent zinc fingers::More than 3 adjacent zinc fingers
Myb
Myb-related
Myb\/SANT domain factors
MyoD \/ ASC-related factors
NF-kappaB-related factors
NFAT-related factors
NFY
NGFI-B-related receptors (NR4)
NK-related factors
Nuclear factor 1
Nuclear factor 1::NK-related factors
Other factors with up to three adjacent zinc fingers
p53-related factors
Paired domain only
Paired plus homeo domain
Paired-related HD factors
PAS domain factors
PBRM1-related factors
POU domain factors
POU domain factors::SOX-related factors
Regulators of differentiation
Responders to external signals (SRF\/RLM1)
RFX-related factors
Runt-related factors
RXR-related receptors (NR2)
RXR-related receptors (NR2)::Thyroid hormone receptor-related factors (NR1)
S1FA
SMAD factors
SMAD factors::SMAD factors
SOX-related factors
STAT factors
Steroid hormone receptors (NR3)
Tal-related factors
Tal-related factors::E2A-related factors
TALE-type homeo domain factors
TBrain-related factors
TCF-7-related factors
TCP domain
TEF-1-related factors
TGA
THAP-related factors
Three-zinc finger Kr\u00fcppel-related factors
Thyroid hormone receptor-related factors (NR1)
Thyroid hormone receptor-related factors (NR1)::RXR-related receptors (NR2)
Trihelix
Tryptophan cluster factors
Unknown
ZF-HD
Name:
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UniPROBE
Species:
Choose Species
Acanthamoeba castellanii
Acyrthosiphon pisum
Allomyces macrogynus
Arabidopsis thaliana
Ashbya gossypii
Aspergillus nidulans
Caenorhabditis elegans
Chimera
Danio rerio
Drosophila melanogaster
Homo sapiens
Kluyveromyces lactis
Monosiga brevicollis
Mus musculus
Mycosphaerella graminicola
N\/A
Nematostella vectensis
Patiria miniata
Plasmodium falciparum
Saccharomyces cerevisiae
Strongylocentrotus purpuratus
Trichoplax adhaerens
Tuber melanosporum
Vibrio harveyi
Domain:
Choose Domain
AFT
AP-2
AP2
ARID
AT_hook
AT_hook
BASIC
BRIGHT
BRLZ
BRLZ
BRLZ
BRLZ
BZIP_1
BZIP_2
BrkDBD
DWA
Distant similarity to homeodomain
E2F_TDP
ETS
ETS
Ets
Fork_head
GATA
GCM
HLH
HLH
HMG_box
HMG_box
HSF_DNA-bind
HTH
HTH APSES-type
Homeobox
Homeobox
Homeobox
Homeobox
Homeobox
Homeobox
IRF
LAG1-DNAbind
LIM
MADS
Mtf2_C
Myb
Myb\/SANT-like
Myb_DNA-binding
Myc-type
NDT80_PhoG
NR
PAX
PAX
PBX
POU
POU
PWWP
RFX
RFX_DNA_binding
SAM_PNT
SAND
SANT
SOXp
Stb3
T-box
TBOX
TBP
TEA
TIG
Zinc Finger C2H2
Zn2Cys6
ZnF_C4
bHLH
bHLH
bZIP
bZIP_1
bZIP_1
bZIP_2
bZIP_2
forkhead
zf-BED
zf-C2H2
zf-C2H2
zf-C2H2
zf-C4
zf-C4
zf-H2C2_2
zf-H2C2_2
zf-NHR\/GATA-type
Paper:
Choose Paper
Badis et al., Science 2009
Barrera et al., Science 2016
Berger et al., Cell 2008
Berger et al., Nat Biotech 2006
Busser et al., Development 2012
Busser et al., PNAS 2012
Cheatle Jarvela et al., Mol Biol Evol 2014
De Masi et al., NAR 2011
De Silva et al., PNAS 2008
Del Bianco et al., PLoS ONE 2010
Grove et al., Cell 2009
Helfer et al., Curr Biol 2011
Lesch et al., Genes Dev 2009
Li et al., Nature 2017
Liu et al., Cell 2018
Liu et al., eLife 2018
Mariani et al., Cell Systems 2017
Nakagawa et al., PNAS 2013
Peterson et al., Genes Dev 2012
Pompeani et al., Mol Microbiol 2008
Rogers et al., Mol Cell 2019
Scharer et al., Cancer Res 2009
Shokri et al., Cell Reports 2018
Soruco et al., Genes Dev 2013
Wei et al., EMBO J 2010
Zhu et al., Genome Res 2009
Name:
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EpiSELEX-seq
Name:
Choose TF
ATF4
CEBPb
p53
Pbx_HOXA1
Pbx_HOXA5
Pbx_HOXA9
Pbx_HOXA9b
Search
MeDReaders
Species:
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Human
Mouse
Tissue:
Choose Tissue
E14
GM12878
H1-hESC
HCT116
HepG2
IMR-90
K562
Name:
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